{ "_id": "6ac7ca6cde46216d5edd2e1d", "Package": "bioclients", "Title": "Clients for Biological Database Web Services", "Version": "0.1.1.9000", "Authors@R": "c(\nperson(\"Samuel\", \"Bharti\", , \"samuelbharti.io@gmail.com\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0003-4190-7058\")),\nperson(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"ths\",\ncomment = c(ORCID = \"0000-0001-9986-114X\")),\nperson(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = \"ths\",\ncomment = c(ORCID = \"0000-0002-4958-2844\")),\nperson(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"),\ncomment = c(ROR = \"03wc8by49\"))\n)", "Description": "Look up genes, variants and proteins from R, without\nwriting a client for every biological web service. Each service\ngets one client that makes the request and returns a table.\nParsing is a separate function that needs no network, so it can\nrun on a saved response and be tested offline. Transport,\nretries, caching and error handling are left to the 'biohttp'\npackage. Dependencies for single services are optional, so you\ndo not install what you will not use. The services covered\ninclude 'Ensembl', described in Dyer et al. (2025)\n, 'UniProt', in The UniProt\nConsortium (2025) , 'gnomAD', in Chen\net al. (2024) , 'Open Targets',\nin Buniello et al. (2025) , and the\n'AlphaFold' Protein Structure Database, in Varadi et al. (2024)\n. Each client's help page cites the\nservice it calls.", "License": "MIT + file LICENSE", "URL": "https://github.com/samuelbharti/bioclients,\nhttps://www.samuelbharti.com/bioclients/", "BugReports": "https://github.com/samuelbharti/bioclients/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.1.0", "Config/pak/sysreqs": "libssl-dev", "Repository": "https://samuelbharti.r-universe.dev", "Date/Publication": "2026-10-08 11:58:43 UTC", "RemoteUrl": "https://github.com/samuelbharti/bioclients", "RemoteRef": "HEAD", "RemoteSha": "93f6f634d9a605319e465d819ca32a339af6e8d1", "RemoteSubdir": "pkg-r", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-08 16:48:17 UTC", "User": "root" }, "Author": "Samuel Bharti [aut, cre, cph] (ORCID:\n),\nBarret Schloerke [ths] (ORCID: ),\nCarson Sievert [ths] (ORCID: ),\nPosit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Samuel Bharti ", "_user": "samuelbharti", "_type": "src", "_file": "bioclients_0.1.1.9000.tar.gz", "_fileid": "https://r2.ropensci.org/af3ce812ad059e66182a2e0c51dc6e458255967f55d1af1b9da4b41fdf986305", "_filesize": 640314, "_sha256": "af3ce812ad059e66182a2e0c51dc6e458255967f55d1af1b9da4b41fdf986305", "_expires": "2027-01-16T16:52:57.000Z", "_created": "2026-10-08T16:48:17.000Z", "_published": "2026-10-08T16:53:00.251Z", "_buildurl": "https://github.com/r-universe/samuelbharti/actions/runs/37811243600", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 113429902044, "time": 166, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11565163593" }, { "job": 113429902058, "time": 161, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11564724260" }, { "job": 113429902281, "time": 169, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11564749247" }, { "job": 113429901959, "time": 158, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", 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"email": "samuelbharti.io@gmail.com", "login": "samuelbharti", "bluesky": "@samuelbharti.com", "linkedin": "in/samuelbharti", "orcid": "0000-0003-4190-7058", "description": "Computational biologist building open-source tools for genomics, multi-omics, and scientific discovery.", "uuid": 58329032 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "biohttp", "version": ">= 0.1.2", "role": "Imports" }, { "package": "httr2", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "jsonlite", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "samuelbharti", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-31", "n": 74 }, { "week": "2026-32", "n": 3 }, { "week": "2026-33", "n": 1 }, 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one DISEASES channel response into a table", "topics": [ "diseases_parse_channel" ] }, { "page": "ensembl_gene_model", "title": "The exon model for a gene", "topics": [ "ensembl_gene_model" ] }, { "page": "ensembl_parse_consequences", "title": "Turn Ensembl transcript consequences into a table", "topics": [ "ensembl_parse_consequences" ] }, { "page": "ensembl_parse_gene_model", "title": "Turn an Ensembl gene lookup into a gene model", "topics": [ "ensembl_parse_gene_model" ] }, { "page": "ensembl_parse_vep", "title": "Turn an Ensembl VEP record into a result", "topics": [ "ensembl_parse_vep" ] }, { "page": "ensembl_vep_id", "title": "Run VEP for a variant id", "topics": [ "ensembl_vep_id" ] }, { "page": "europepmc_count", "title": "How many publications Europe PMC has for a query", "topics": [ "europepmc_count" ] }, { "page": "europepmc_parse_count", "title": "Read the hit count off a Europe PMC response", "topics": [ "europepmc_parse_count" ] }, { "page": "europepmc_parse_results", 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